Variant report
Variant | rs10512298 |
---|---|
Chromosome Location | chr9:105278666-105278667 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-C9orf107-4 | chr9:105277486-105280590 | NONHSAT133766 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10512299 | 0.91[CHB][hapmap];1.00[CHD][hapmap];0.94[ASN][1000 genomes] |
rs10820187 | 0.87[ASN][1000 genomes] |
rs10990124 | 0.89[ASN][1000 genomes] |
rs10990125 | 0.89[ASN][1000 genomes] |
rs10990126 | 0.89[ASN][1000 genomes] |
rs10990127 | 0.89[ASN][1000 genomes] |
rs10990148 | 0.94[ASN][1000 genomes] |
rs10990158 | 0.91[ASN][1000 genomes] |
rs12004032 | 0.80[EUR][1000 genomes] |
rs12380562 | 0.87[ASN][1000 genomes] |
rs13300373 | 0.81[LWK][hapmap];0.82[TSI][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes] |
rs2162065 | 0.89[ASN][1000 genomes] |
rs7029589 | 0.80[EUR][1000 genomes] |
rs7040314 | 0.81[LWK][hapmap];0.82[TSI][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes] |
rs7042651 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7873462 | 0.88[CEU][hapmap];0.81[CHD][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7873568 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv893650 | chr9:105198550-105292037 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1040886 | chr9:105246682-105296385 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv1055040 | chr9:105264905-105355578 | Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |