Variant report

Variant	rs7042651
Chromosome Location	chr9:105282766-105282767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10512298	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10512299	0.83[CHD][hapmap]
rs10990131	0.89[ASN][1000 genomes]
rs10990132	0.91[ASN][1000 genomes]
rs12004032	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs1946334	0.88[ASN][1000 genomes]
rs2068258	0.91[ASN][1000 genomes]
rs4743553	0.83[EUR][1000 genomes]
rs6479116	0.87[ASN][1000 genomes]
rs7029589	0.90[EUR][1000 genomes]
rs7032196	0.84[ASN][1000 genomes]
rs7044642	0.83[ASN][1000 genomes]
rs73510672	0.91[ASN][1000 genomes]
rs7862593	0.91[ASN][1000 genomes]
rs7871339	0.91[ASN][1000 genomes]
rs7873462	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873568	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893650	chr9:105198550-105292037	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040886	chr9:105246682-105296385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1055040	chr9:105264905-105355578	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7042651	FKTN	cis	parietal	SCAN
rs7042651	TEX10	cis	cerebellum	SCAN
rs7042651	XPA	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105281000-105283400	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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