Variant report

Variant	rs10513012
Chromosome Location	chr5:52479728-52479729
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10491446	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10805446	1.00[AMR][1000 genomes]
rs10940309	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10940310	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12153223	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12153508	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12189522	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16881115	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17341957	1.00[CEU][hapmap]
rs17343328	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73756631	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52477200-52479800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links