Variant report

Variant	rs10513140
Chromosome Location	chr3:141218057-141218058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141218042..141219616-chr3:141230840..141232406,2	K562	blood:
2	chr3:141217233..141220189-chr3:141223393..141226923,6	K562	blood:
3	chr3:141215787..141218632-chr3:141221462..141225084,3	K562	blood:
4	chr3:141217049..141220342-chr3:141227507..141230156,3	K562	blood:
5	chr3:141214596..141217091-chr3:141218047..141220301,2	K562	blood:
6	chr3:141216419..141218648-chr3:141218821..141221433,4	K562	blood:
7	chr3:141217331..141219301-chr3:141222092..141224227,2	MCF-7	breast:
8	chr3:141217065..141219629-chr3:141222334..141224305,2	MCF-7	breast:
9	chr3:141173524..141175043-chr3:141217283..141220078,2	MCF-7	breast:

No data

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1709	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs2871887	1.00[LWK][hapmap]
rs62282006	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9849775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10513140	ATP1B3	cis	cerebellum	SCAN
rs10513140	RASA2	cis	lymphoblastoid	seeQTL

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141207000-141235800	Weak transcription	Gastric	stomach
2	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
3	chr3:141207400-141231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:141207800-141233200	Weak transcription	Fetal Intestine Large	intestine
5	chr3:141207800-141235600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:141208400-141231200	Weak transcription	Fetal Lung	lung
7	chr3:141208400-141232600	Weak transcription	NH-A	brain
8	chr3:141209600-141232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:141209800-141234200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:141210000-141221000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:141210200-141224200	Weak transcription	K562	blood
12	chr3:141210400-141248000	Weak transcription	NHLF	lung
13	chr3:141211000-141229400	Weak transcription	NHDF-Ad	bronchial
14	chr3:141211200-141220000	Weak transcription	HepG2	liver
15	chr3:141211400-141235400	Weak transcription	A549	lung
16	chr3:141211600-141220200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:141215000-141221000	Weak transcription	HSMM	muscle
18	chr3:141215000-141221600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:141216000-141239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:141217000-141218800	Flanking Active TSS	Dnd41	blood
21	chr3:141217000-141219000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr3:141217200-141218400	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr3:141217200-141219000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr3:141217200-141219000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr3:141217200-141219200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr3:141217200-141219200	Enhancers	Small Intestine	intestine
27	chr3:141217200-141220400	Enhancers	Primary B cells from peripheral blood	blood
28	chr3:141217200-141220400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr3:141217200-141232000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:141217400-141218200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
31	chr3:141217400-141218400	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr3:141217400-141218400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr3:141217400-141218600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr3:141217400-141218800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:141217400-141218800	Enhancers	Left Ventricle	heart
36	chr3:141217400-141219000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr3:141217400-141219200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:141217400-141219600	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr3:141217600-141218200	Enhancers	Right Atrium	heart
40	chr3:141217600-141218400	Flanking Active TSS	Thymus	Thymus
41	chr3:141217600-141218400	Flanking Active TSS	GM12878-XiMat	blood
42	chr3:141217600-141218400	Enhancers	HMEC	breast
43	chr3:141217600-141220000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:141217800-141218200	Active TSS	Primary T cells fromperipheralblood	blood
45	chr3:141217800-141218200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:141217800-141218200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:141217800-141218200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr3:141217800-141218200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:141217800-141218200	Weak transcription	Colonic Mucosa	Colon
50	chr3:141217800-141218200	Flanking Active TSS	Fetal Thymus	thymus

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