Variant report

Variant	rs62282006
Chromosome Location	chr3:141204391-141204392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:141204382-141204648	K562	blood:	n/a	n/a
2	SPI1	chr3:141204391-141204784	GM12891	blood:	n/a	chr3:141204599-141204612 chr3:141204601-141204610 chr3:141204598-141204611 chr3:141204602-141204609
3	SPI1	chr3:141204330-141205241	HL-60	blood:	n/a	chr3:141204599-141204612 chr3:141204601-141204610 chr3:141204598-141204611 chr3:141204602-141204609
4	POLR2A	chr3:141204295-141207151	HUVEC	blood vessel:	n/a	n/a
5	SPI1	chr3:141204382-141204825	HL-60	blood:	n/a	chr3:141204599-141204612 chr3:141204601-141204610 chr3:141204598-141204611 chr3:141204602-141204609
6	GATA2	chr3:141204305-141205231	HUVEC	blood vessel:	n/a	chr3:141204791-141204800 chr3:141204791-141204798 chr3:141204788-141204798 chr3:141204791-141204798 chr3:141204790-141204800 chr3:141204784-141204805 chr3:141204791-141204798

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141194536..141196661-chr3:141202566..141205649,3	K562	blood:
2	chr3:141203440..141205280-chr3:141224808..141226638,2	K562	blood:

Variant related genes	Relation type
RASA2	TF binding region

rs_ID	r²[population]
rs10513140	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9849775	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141196600-141204400	Weak transcription	NH-A	brain
2	chr3:141198800-141204600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:141199600-141204600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:141200200-141204600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:141200200-141204600	Enhancers	HepG2	liver
6	chr3:141201200-141205400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:141201400-141204800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:141201400-141205400	Enhancers	Placenta	Placenta
9	chr3:141201800-141204400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:141201800-141204600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:141201800-141204600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:141202200-141204600	Enhancers	Primary hematopoietic stem cells	blood
13	chr3:141202200-141204600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:141202200-141204600	Weak transcription	NHLF	lung
15	chr3:141202400-141204400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:141202400-141204800	Weak transcription	Thymus	Thymus
17	chr3:141202600-141204400	Weak transcription	Hela-S3	cervix
18	chr3:141203000-141205600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr3:141203200-141204400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr3:141203400-141204400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:141203400-141205600	Enhancers	Lung	lung
22	chr3:141203600-141204400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:141203600-141204400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:141203600-141204600	Enhancers	Primary T cells from cord blood	blood
25	chr3:141203600-141204600	Enhancers	NHDF-Ad	bronchial
26	chr3:141203600-141204800	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr3:141203800-141204800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr3:141203800-141205200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:141203800-141205200	Enhancers	Primary B cells from peripheral blood	blood
30	chr3:141203800-141205200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr3:141203800-141205200	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr3:141203800-141205400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr3:141204000-141205000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:141204000-141205000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:141204000-141205400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:141204000-141205400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:141204200-141204600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:141204200-141204600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:141204200-141204600	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr3:141204200-141204600	Enhancers	Muscle Satellite Cultured Cells	--
41	chr3:141204200-141204600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:141204200-141204600	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr3:141204200-141204600	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr3:141204200-141204600	Enhancers	A549	lung
45	chr3:141204200-141204600	Enhancers	NHEK	skin
46	chr3:141204200-141204600	Enhancers	Osteobl	bone
47	chr3:141204200-141204800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:141204200-141204800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr3:141204200-141204800	Enhancers	Fetal Intestine Small	intestine
50	chr3:141204200-141204800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links