Variant report

Variant	rs10513229
Chromosome Location	chr3:143595446-143595447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10513227	0.96[AFR][1000 genomes]
rs10513228	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143594200-143596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:143594400-143595600	Enhancers	Adipose Nuclei	Adipose
3	chr3:143594400-143595800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:143594800-143599800	Weak transcription	HUVEC	blood vessel
5	chr3:143595200-143596000	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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