Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10513218	1.00[CEU][hapmap]
rs10513227	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10513229	0.96[AFR][1000 genomes]
rs10513233	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11920369	1.00[CEU][hapmap]
rs16854417	1.00[CEU][hapmap]
rs16854503	1.00[CEU][hapmap]
rs16854525	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16854588	1.00[EUR][1000 genomes]
rs16854594	0.84[EUR][1000 genomes]
rs16854626	1.00[CEU][hapmap]
rs2361210	1.00[CEU][hapmap]
rs3935022	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3935023	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4072487	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58491946	0.84[EUR][1000 genomes]
rs60153350	0.84[EUR][1000 genomes]
rs6440202	1.00[CEU][hapmap]
rs6763899	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6780983	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6803662	1.00[CEU][hapmap]
rs73010559	1.00[EUR][1000 genomes]
rs73010566	1.00[EUR][1000 genomes]
rs7617512	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7617571	0.84[EUR][1000 genomes]
rs7628380	1.00[CEU][hapmap]
rs7628606	1.00[CEU][hapmap]
rs7650329	1.00[CEU][hapmap]
rs924852	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs924853	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs924854	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs924855	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143588200-143589200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:143588200-143589400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:143588400-143589000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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