Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143601941..143604638-chr3:143689903..143691740,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10513218	1.00[CEU][hapmap]
rs10513227	0.84[EUR][1000 genomes]
rs10513228	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11920369	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16854417	1.00[CEU][hapmap]
rs16854503	1.00[CEU][hapmap]
rs16854525	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16854588	0.84[EUR][1000 genomes]
rs16854594	0.84[EUR][1000 genomes]
rs16854626	1.00[CEU][hapmap]
rs2361210	1.00[CEU][hapmap]
rs3935022	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3935023	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3935024	0.92[EUR][1000 genomes]
rs4072487	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57315003	0.92[EUR][1000 genomes]
rs58491946	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60153350	1.00[EUR][1000 genomes]
rs6440202	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6763899	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780983	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803662	1.00[CEU][hapmap]
rs73010559	0.84[EUR][1000 genomes]
rs73010566	0.84[EUR][1000 genomes]
rs7617512	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7617571	1.00[EUR][1000 genomes]
rs7628380	1.00[CEU][hapmap]
rs7628606	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7650329	1.00[CEU][hapmap]
rs924852	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs924853	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs924854	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs924855	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143601600-143602600	Enhancers	HMEC	breast
2	chr3:143601600-143602600	Enhancers	NHEK	skin
3	chr3:143601800-143602400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:143601800-143602600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:143601800-143602800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:143602200-143602600	Enhancers	HUES48 Cell Line	embryonic stem cell

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