Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143620792..143623032-chr3:143690321..143691839,2	MCF-7	breast:
2	chr3:143619574..143622269-chr3:143688723..143691584,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10513218	1.00[CEU][hapmap]
rs10513233	1.00[CEU][hapmap]
rs11920369	1.00[CEU][hapmap]
rs16854417	1.00[CEU][hapmap]
rs16854503	1.00[CEU][hapmap]
rs16854525	1.00[CEU][hapmap]
rs16854626	1.00[CEU][hapmap]
rs2361210	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2885196	1.00[JPT][hapmap]
rs60705908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61201104	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440202	1.00[CEU][hapmap]
rs6763899	1.00[CEU][hapmap]
rs6780983	1.00[CEU][hapmap]
rs6795569	1.00[JPT][hapmap]
rs6803662	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73010596	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73010600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617190	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7617512	1.00[CEU][hapmap]
rs7621156	1.00[JPT][hapmap]
rs7628606	1.00[CEU][hapmap]
rs7628788	1.00[ASN][1000 genomes]
rs7650329	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2646891	chr3:143620488-143621943	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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