Variant report

Variant	rs7628606
Chromosome Location	chr3:143621724-143621725
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143620792..143623032-chr3:143690321..143691839,2	MCF-7	breast:
2	chr3:143619574..143622269-chr3:143688723..143691584,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10513218	1.00[CEU][hapmap]
rs10513233	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11917945	1.00[ASN][1000 genomes]
rs11920143	1.00[ASN][1000 genomes]
rs11920369	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11927846	1.00[ASN][1000 genomes]
rs11927849	1.00[ASN][1000 genomes]
rs11929231	1.00[ASN][1000 genomes]
rs11929333	1.00[ASN][1000 genomes]
rs11929359	1.00[ASN][1000 genomes]
rs16854417	1.00[CEU][hapmap]
rs16854503	1.00[CEU][hapmap]
rs16854525	1.00[CEU][hapmap]
rs16854626	1.00[CEU][hapmap]
rs2361210	1.00[CEU][hapmap]
rs34134140	1.00[ASN][1000 genomes]
rs34545699	1.00[ASN][1000 genomes]
rs34908584	1.00[ASN][1000 genomes]
rs35665126	1.00[ASN][1000 genomes]
rs3935022	0.92[EUR][1000 genomes]
rs3935023	0.92[EUR][1000 genomes]
rs3935024	0.85[EUR][1000 genomes]
rs4072487	0.92[EUR][1000 genomes]
rs4839670	1.00[CEU][hapmap]
rs56744902	1.00[ASN][1000 genomes]
rs57315003	0.85[EUR][1000 genomes]
rs57591034	1.00[ASN][1000 genomes]
rs57729510	1.00[ASN][1000 genomes]
rs57800664	1.00[ASN][1000 genomes]
rs57927752	1.00[ASN][1000 genomes]
rs57955776	1.00[ASN][1000 genomes]
rs58101543	1.00[ASN][1000 genomes]
rs58421965	1.00[ASN][1000 genomes]
rs58491946	0.92[EUR][1000 genomes]
rs58628669	1.00[ASN][1000 genomes]
rs58889287	1.00[ASN][1000 genomes]
rs59562748	1.00[ASN][1000 genomes]
rs60153350	0.92[EUR][1000 genomes]
rs61074140	1.00[ASN][1000 genomes]
rs6440202	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6763899	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6780983	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6803662	1.00[CEU][hapmap]
rs7617512	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7617571	0.92[EUR][1000 genomes]
rs7621206	1.00[CEU][hapmap]
rs7627342	1.00[ASN][1000 genomes]
rs7628380	1.00[CEU][hapmap]
rs7640118	1.00[ASN][1000 genomes]
rs7649330	1.00[ASN][1000 genomes]
rs7649334	1.00[ASN][1000 genomes]
rs7649532	1.00[ASN][1000 genomes]
rs7649724	1.00[ASN][1000 genomes]
rs7650329	1.00[CEU][hapmap]
rs7651412	1.00[CEU][hapmap]
rs924852	0.92[EUR][1000 genomes]
rs924853	0.92[EUR][1000 genomes]
rs924854	0.92[EUR][1000 genomes]
rs924855	0.92[EUR][1000 genomes]
rs9827103	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2646891	chr3:143620488-143621943	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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