Variant report

Variant	rs34545699
Chromosome Location	chr3:143622937-143622938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143620792..143623032-chr3:143690321..143691839,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11917945	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11920143	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11927846	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11927849	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11929231	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11929333	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11929359	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34021189	1.00[AFR][1000 genomes]
rs34134140	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34512479	0.94[AFR][1000 genomes]
rs34585855	1.00[AFR][1000 genomes]
rs34749272	1.00[AFR][1000 genomes]
rs34908584	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35665126	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56744902	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57591034	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57729510	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57800664	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57927752	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57955776	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58101543	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58421965	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58628669	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58889287	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59562748	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61074140	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7627342	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7628606	1.00[ASN][1000 genomes]
rs7640118	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7649330	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7649334	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7649532	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7649724	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links