Variant report

Variant	rs56744902
Chromosome Location	chr3:143629695-143629696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11917945	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11920143	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11927846	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11927849	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11929231	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11929333	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11929359	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34021189	0.95[AFR][1000 genomes]
rs34134140	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34512479	0.89[AFR][1000 genomes]
rs34545699	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34585855	0.95[AFR][1000 genomes]
rs34749272	0.95[AFR][1000 genomes]
rs34908584	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35665126	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57591034	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57729510	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57800664	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57927752	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57955776	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58101543	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58421965	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58628669	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58889287	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59562748	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61074140	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7627342	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7628606	1.00[ASN][1000 genomes]
rs7640118	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7649330	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7649334	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7649532	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7649724	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143628800-143629800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:143628800-143629800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:143628800-143629800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:143628800-143630000	Enhancers	HMEC	breast
5	chr3:143628800-143630000	Enhancers	NHEK	skin

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