Variant report
| Variant | rs34585855 |
|---|---|
| Chromosome Location | chr3:143622861-143622862 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:143620792..143623032-chr3:143690321..143691839,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000181744 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11917945 | 0.95[AFR][1000 genomes] |
| rs11920143 | 0.95[AFR][1000 genomes] |
| rs11927846 | 0.81[AFR][1000 genomes] |
| rs11927849 | 0.81[AFR][1000 genomes] |
| rs11929231 | 0.95[AFR][1000 genomes] |
| rs11929333 | 0.95[AFR][1000 genomes] |
| rs11929359 | 0.95[AFR][1000 genomes] |
| rs34021189 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34134140 | 0.95[AFR][1000 genomes] |
| rs34512479 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34545699 | 1.00[AFR][1000 genomes] |
| rs34749272 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34908584 | 1.00[AFR][1000 genomes] |
| rs35665126 | 0.89[AFR][1000 genomes] |
| rs56744902 | 0.95[AFR][1000 genomes] |
| rs57591034 | 0.95[AFR][1000 genomes] |
| rs57729510 | 0.95[AFR][1000 genomes] |
| rs57800664 | 0.95[AFR][1000 genomes] |
| rs57927752 | 0.95[AFR][1000 genomes] |
| rs57955776 | 0.95[AFR][1000 genomes] |
| rs58101543 | 0.95[AFR][1000 genomes] |
| rs58421965 | 0.95[AFR][1000 genomes] |
| rs58628669 | 0.95[AFR][1000 genomes] |
| rs58889287 | 0.95[AFR][1000 genomes] |
| rs59562748 | 0.95[AFR][1000 genomes] |
| rs61074140 | 0.95[AFR][1000 genomes] |
| rs7627342 | 0.95[AFR][1000 genomes] |
| rs7640118 | 1.00[AFR][1000 genomes] |
| rs7649330 | 0.95[AFR][1000 genomes] |
| rs7649334 | 0.92[AFR][1000 genomes] |
| rs7649532 | 0.95[AFR][1000 genomes] |
| rs7649724 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877568 | chr3:143621140-143992630 | Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
