Variant report

Variant	rs6440202
Chromosome Location	chr3:143610015-143610016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143607486..143610242-chr3:143690819..143692656,2	K562	blood:
2	chr3:143607160..143610158-chr3:143611331..143613238,2	K562	blood:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10513218	1.00[CEU][hapmap]
rs10513230	0.85[JPT][hapmap]
rs10513232	0.85[JPT][hapmap]
rs10513233	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11920369	1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1394403	0.85[JPT][hapmap]
rs1504605	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16854417	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs16854421	0.85[JPT][hapmap]
rs16854423	0.85[JPT][hapmap]
rs16854424	0.85[JPT][hapmap]
rs16854463	0.85[JPT][hapmap]
rs16854493	0.85[JPT][hapmap]
rs16854503	1.00[CEU][hapmap]
rs16854525	1.00[CEU][hapmap]
rs16854588	0.81[AMR][1000 genomes]
rs16854594	0.92[EUR][1000 genomes]
rs16854626	1.00[CEU][hapmap]
rs17275413	0.85[JPT][hapmap]
rs1823220	0.85[JPT][hapmap]
rs2361199	0.85[JPT][hapmap]
rs2361210	1.00[CEU][hapmap]
rs3935022	0.92[EUR][1000 genomes]
rs3935023	0.92[EUR][1000 genomes]
rs3935024	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4072487	0.92[EUR][1000 genomes]
rs4839613	0.82[JPT][hapmap]
rs4839614	0.85[JPT][hapmap]
rs4839663	0.85[JPT][hapmap]
rs57315003	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58491946	0.92[EUR][1000 genomes]
rs60153350	0.92[EUR][1000 genomes]
rs6763899	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6765414	0.85[JPT][hapmap]
rs6769847	0.82[JPT][hapmap]
rs6780983	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6792031	0.85[JPT][hapmap]
rs6799226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6803662	1.00[CEU][hapmap]
rs6804065	0.85[JPT][hapmap]
rs73871863	1.00[ASN][1000 genomes]
rs73871864	0.93[ASN][1000 genomes]
rs7617512	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7617571	0.92[EUR][1000 genomes]
rs7628380	1.00[CEU][hapmap]
rs7628606	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7650329	1.00[CEU][hapmap]
rs7651412	0.85[JPT][hapmap]
rs7652644	0.85[JPT][hapmap]
rs924851	0.85[JPT][hapmap]
rs924852	0.92[EUR][1000 genomes]
rs924853	0.92[EUR][1000 genomes]
rs924854	0.92[EUR][1000 genomes]
rs924855	0.92[EUR][1000 genomes]
rs951594	0.85[JPT][hapmap]
rs951595	0.85[JPT][hapmap]
rs9822158	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143603600-143616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:143607600-143611200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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