Variant report

Variant	rs6792031
Chromosome Location	chr3:143535265-143535266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143534241..143536547-chr3:143539436..143542162,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10433437	0.90[CHB][hapmap]
rs10513230	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10513231	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs10513232	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11920369	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12497227	0.90[CHB][hapmap]
rs1394403	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1504605	0.85[JPT][hapmap]
rs16854417	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16854421	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16854423	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16854424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16854463	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16854493	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16854503	0.90[CHB][hapmap]
rs16854525	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17275413	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1823220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1900643	0.90[CHB][hapmap]
rs1989180	0.90[CHB][hapmap]
rs2121774	0.98[ASN][1000 genomes]
rs2361199	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2361204	0.90[CHB][hapmap]
rs4839613	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4839614	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4839659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4839660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839662	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839670	0.90[CHB][hapmap]
rs55904283	0.98[ASN][1000 genomes]
rs56010653	0.98[ASN][1000 genomes]
rs62268898	1.00[ASN][1000 genomes]
rs6440202	0.85[JPT][hapmap]
rs6764661	0.90[CHB][hapmap]
rs6765414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6769847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6776336	0.90[CHB][hapmap]
rs6793658	1.00[ASN][1000 genomes]
rs6799226	0.82[JPT][hapmap]
rs6804065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs72997316	0.98[ASN][1000 genomes]
rs72997334	0.98[ASN][1000 genomes]
rs73008747	0.81[ASN][1000 genomes]
rs7621206	0.90[CHB][hapmap]
rs7651412	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7652644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs924851	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs951594	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs951595	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9822158	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9827103	0.90[CHB][hapmap]
rs9832471	0.90[CHB][hapmap]
rs9844917	0.85[ASN][1000 genomes]
rs9847107	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1001076	chr3:143513526-143547076	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536747	chr3:143513526-143547076	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143514200-143544200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143529600-143540600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:143529600-143543800	Weak transcription	Stomach Mucosa	stomach
4	chr3:143530000-143538800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:143530600-143539800	Weak transcription	Ovary	ovary
6	chr3:143530600-143540600	Weak transcription	Placenta	Placenta
7	chr3:143530800-143540800	Weak transcription	Fetal Stomach	stomach
8	chr3:143531000-143539800	Weak transcription	Adipose Nuclei	Adipose
9	chr3:143531000-143543200	Weak transcription	NHDF-Ad	bronchial
10	chr3:143531400-143539000	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:143531800-143539400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:143531800-143543200	Weak transcription	Aorta	Aorta
13	chr3:143533600-143543200	Weak transcription	Fetal Lung	lung
14	chr3:143533800-143539400	Weak transcription	Spleen	Spleen
15	chr3:143533800-143540600	Weak transcription	Primary B cells from cord blood	blood
16	chr3:143533800-143543200	Weak transcription	Right Atrium	heart
17	chr3:143534000-143539800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr3:143534000-143540600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:143534200-143539600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:143534200-143539800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:143534200-143540000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:143534400-143535400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr3:143534400-143539400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:143534400-143539400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:143534400-143539800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:143534400-143540600	Weak transcription	Fetal Thymus	thymus
27	chr3:143535200-143539200	Weak transcription	Primary monocytes fromperipheralblood	blood

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