Variant report

Variant	rs6799226
Chromosome Location	chr3:143609062-143609063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143607486..143610242-chr3:143690819..143692656,2	K562	blood:
2	chr3:143607627..143609347-chr3:143688609..143690879,2	MCF-7	breast:
3	chr3:143607160..143610158-chr3:143611331..143613238,2	K562	blood:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10513230	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs10513231	1.00[EUR][1000 genomes]
rs10513232	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs11920369	0.82[JPT][hapmap]
rs1394403	0.82[JPT][hapmap]
rs1504605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16854417	0.82[JPT][hapmap]
rs16854421	0.82[JPT][hapmap]
rs16854423	0.82[JPT][hapmap]
rs16854424	0.82[JPT][hapmap]
rs16854463	0.82[JPT][hapmap]
rs16854493	0.82[JPT][hapmap]
rs16854639	1.00[EUR][1000 genomes]
rs17275413	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs1823220	0.82[JPT][hapmap]
rs2361199	0.82[JPT][hapmap]
rs4839614	0.82[JPT][hapmap]
rs4839663	0.82[JPT][hapmap]
rs56954087	1.00[EUR][1000 genomes]
rs57315003	0.93[ASN][1000 genomes]
rs57853180	1.00[EUR][1000 genomes]
rs58917148	1.00[EUR][1000 genomes]
rs59089060	1.00[EUR][1000 genomes]
rs60230497	1.00[EUR][1000 genomes]
rs61195916	1.00[EUR][1000 genomes]
rs61534234	1.00[EUR][1000 genomes]
rs6440202	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6765414	0.82[JPT][hapmap]
rs6792031	0.82[JPT][hapmap]
rs6804065	0.82[JPT][hapmap]
rs73871858	1.00[EUR][1000 genomes]
rs73871859	1.00[EUR][1000 genomes]
rs73871860	1.00[EUR][1000 genomes]
rs73871861	1.00[EUR][1000 genomes]
rs73871863	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73871864	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7651412	0.82[JPT][hapmap]
rs7652644	0.82[JPT][hapmap]
rs924851	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs951594	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs951595	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs9822158	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2509262	chr3:143607895-143609361	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143603600-143616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:143607600-143611200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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