Variant report

Variant	rs57853180
Chromosome Location	chr3:143606691-143606692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143604929..143607401-chr3:143613434..143616389,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10513230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920369	0.95[ASN][1000 genomes]
rs1394403	0.84[ASN][1000 genomes]
rs1504605	1.00[EUR][1000 genomes]
rs16854525	0.88[ASN][1000 genomes]
rs16854588	0.89[ASN][1000 genomes]
rs16854594	0.95[ASN][1000 genomes]
rs16854639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17275413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935024	0.95[ASN][1000 genomes]
rs55734708	0.93[ASN][1000 genomes]
rs56954087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58917148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59089060	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60230497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60765943	0.90[ASN][1000 genomes]
rs61195916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61534234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61574504	0.88[ASN][1000 genomes]
rs6799226	1.00[EUR][1000 genomes]
rs73010566	0.89[ASN][1000 genomes]
rs73871853	0.93[ASN][1000 genomes]
rs73871854	0.93[ASN][1000 genomes]
rs73871855	0.93[ASN][1000 genomes]
rs73871858	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73871859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73871860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73871861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73871863	1.00[EUR][1000 genomes]
rs73871864	1.00[EUR][1000 genomes]
rs924851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143602600-143607200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:143603600-143616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:143605600-143607800	Enhancers	Fetal Lung	lung
4	chr3:143606400-143606800	Weak transcription	Ovary	ovary
5	chr3:143606400-143607600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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