Variant report
| Variant | rs55734708 |
|---|---|
| Chromosome Location | chr3:143592610-143592611 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10513230 | 0.93[ASN][1000 genomes] |
| rs10513231 | 0.93[ASN][1000 genomes] |
| rs10513232 | 0.93[ASN][1000 genomes] |
| rs11920369 | 0.88[ASN][1000 genomes] |
| rs1394403 | 0.91[ASN][1000 genomes] |
| rs16854493 | 0.82[ASN][1000 genomes] |
| rs16854525 | 0.95[ASN][1000 genomes] |
| rs16854588 | 0.95[ASN][1000 genomes] |
| rs16854594 | 0.88[ASN][1000 genomes] |
| rs16854639 | 0.93[ASN][1000 genomes] |
| rs17275413 | 0.93[ASN][1000 genomes] |
| rs3935024 | 0.88[ASN][1000 genomes] |
| rs56117352 | 0.80[ASN][1000 genomes] |
| rs56954087 | 0.93[ASN][1000 genomes] |
| rs57761063 | 1.00[AFR][1000 genomes] |
| rs57853180 | 0.93[ASN][1000 genomes] |
| rs58917148 | 0.93[ASN][1000 genomes] |
| rs59089060 | 0.93[ASN][1000 genomes] |
| rs60230497 | 0.93[ASN][1000 genomes] |
| rs60765943 | 0.98[ASN][1000 genomes] |
| rs61195916 | 0.85[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61534234 | 0.88[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61574504 | 0.95[ASN][1000 genomes] |
| rs73008747 | 0.86[ASN][1000 genomes] |
| rs73010566 | 0.95[ASN][1000 genomes] |
| rs73871853 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73871854 | 1.00[ASN][1000 genomes] |
| rs73871855 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73871858 | 0.93[ASN][1000 genomes] |
| rs73871859 | 0.93[ASN][1000 genomes] |
| rs73871860 | 0.93[ASN][1000 genomes] |
| rs73871861 | 0.93[ASN][1000 genomes] |
| rs924851 | 0.93[ASN][1000 genomes] |
| rs951594 | 0.93[ASN][1000 genomes] |
| rs951595 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009935 | chr3:143497700-143610852 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:143589400-143594600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr3:143592600-143593200 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
