Variant report

Variant	rs57761063
Chromosome Location	chr3:143595763-143595764
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55734708	1.00[AFR][1000 genomes]
rs61195916	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61534234	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871854	1.00[AMR][1000 genomes]
rs73871855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871864	1.00[AMR][1000 genomes]
rs7643784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143594200-143596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:143594400-143595800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:143594800-143599800	Weak transcription	HUVEC	blood vessel
4	chr3:143595200-143596000	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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