Variant report

Variant	rs7643784
Chromosome Location	chr3:143497323-143497324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57761063	1.00[AMR][1000 genomes]
rs61195916	1.00[AMR][1000 genomes]
rs61534234	1.00[AMR][1000 genomes]
rs73871853	1.00[AMR][1000 genomes]
rs73871854	1.00[AMR][1000 genomes]
rs73871855	1.00[AMR][1000 genomes]
rs73871864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143476600-143500400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:143492400-143513000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:143494600-143505200	Weak transcription	NHLF	lung
4	chr3:143494800-143498800	Weak transcription	Primary T cells from cord blood	blood
5	chr3:143494800-143500600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:143494800-143500600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:143494800-143505200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:143494800-143505200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:143494800-143505200	Weak transcription	Fetal Lung	lung
10	chr3:143494800-143505400	Weak transcription	Brain Angular Gyrus	brain
11	chr3:143494800-143505400	Weak transcription	Right Atrium	heart
12	chr3:143494800-143515600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr3:143494800-143515800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr3:143495000-143505400	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:143496200-143500800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:143496200-143505200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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