Variant report

Variant	rs73010566
Chromosome Location	chr3:143588593-143588594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10513227	1.00[EUR][1000 genomes]
rs10513228	1.00[EUR][1000 genomes]
rs10513230	0.89[ASN][1000 genomes]
rs10513231	0.89[ASN][1000 genomes]
rs10513232	0.89[ASN][1000 genomes]
rs10513233	0.84[EUR][1000 genomes]
rs11920369	0.93[ASN][1000 genomes]
rs1394403	0.95[ASN][1000 genomes]
rs16854525	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16854588	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16854594	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16854639	0.89[ASN][1000 genomes]
rs17275413	0.89[ASN][1000 genomes]
rs3935022	0.84[EUR][1000 genomes]
rs3935023	0.84[EUR][1000 genomes]
rs3935024	0.93[ASN][1000 genomes]
rs4072487	0.84[EUR][1000 genomes]
rs55734708	0.95[ASN][1000 genomes]
rs56954087	0.89[ASN][1000 genomes]
rs57315003	0.88[AMR][1000 genomes]
rs57853180	0.89[ASN][1000 genomes]
rs58491946	0.84[EUR][1000 genomes]
rs58917148	0.89[ASN][1000 genomes]
rs59089060	0.89[ASN][1000 genomes]
rs60153350	0.84[EUR][1000 genomes]
rs60230497	0.89[ASN][1000 genomes]
rs60765943	0.93[ASN][1000 genomes]
rs61195916	0.89[ASN][1000 genomes]
rs61534234	0.89[ASN][1000 genomes]
rs61574504	0.91[ASN][1000 genomes]
rs6763899	0.84[EUR][1000 genomes]
rs6780983	0.84[EUR][1000 genomes]
rs73008747	0.82[ASN][1000 genomes]
rs73010559	1.00[EUR][1000 genomes]
rs73871853	0.95[ASN][1000 genomes]
rs73871854	0.95[ASN][1000 genomes]
rs73871855	0.95[ASN][1000 genomes]
rs73871858	0.89[ASN][1000 genomes]
rs73871859	0.89[ASN][1000 genomes]
rs73871860	0.89[ASN][1000 genomes]
rs73871861	0.89[ASN][1000 genomes]
rs7617512	0.84[EUR][1000 genomes]
rs7617571	0.84[EUR][1000 genomes]
rs924851	0.89[ASN][1000 genomes]
rs924852	0.84[EUR][1000 genomes]
rs924853	0.84[EUR][1000 genomes]
rs924854	0.84[EUR][1000 genomes]
rs924855	0.84[EUR][1000 genomes]
rs951594	0.89[ASN][1000 genomes]
rs951595	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143588200-143589200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:143588200-143589400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:143588400-143589000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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