Variant report

Variant	rs6763899
Chromosome Location	chr3:143611409-143611410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143607160..143610158-chr3:143611331..143613238,2	K562	blood:
2	chr3:143610538..143615148-chr3:143689957..143693126,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10513218	1.00[CEU][hapmap]
rs10513227	0.84[EUR][1000 genomes]
rs10513228	0.84[EUR][1000 genomes]
rs10513233	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11920369	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16854417	1.00[CEU][hapmap]
rs16854503	1.00[CEU][hapmap]
rs16854525	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16854543	1.00[ASN][1000 genomes]
rs16854580	1.00[ASN][1000 genomes]
rs16854588	0.84[EUR][1000 genomes]
rs16854594	0.84[EUR][1000 genomes]
rs16854623	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16854626	1.00[CEU][hapmap]
rs2361210	1.00[CEU][hapmap]
rs3935022	1.00[EUR][1000 genomes]
rs3935023	1.00[EUR][1000 genomes]
rs3935024	0.92[EUR][1000 genomes]
rs4072487	1.00[EUR][1000 genomes]
rs4494926	1.00[ASN][1000 genomes]
rs57315003	0.92[EUR][1000 genomes]
rs57604330	1.00[ASN][1000 genomes]
rs58491946	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60095849	1.00[ASN][1000 genomes]
rs60153350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440202	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6780983	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803662	1.00[CEU][hapmap]
rs73010559	0.84[EUR][1000 genomes]
rs73010566	0.84[EUR][1000 genomes]
rs7617512	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624170	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7628380	1.00[CEU][hapmap]
rs7628606	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7650329	1.00[CEU][hapmap]
rs924852	1.00[EUR][1000 genomes]
rs924853	1.00[EUR][1000 genomes]
rs924854	1.00[EUR][1000 genomes]
rs924855	1.00[EUR][1000 genomes]
rs9289669	1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143603600-143616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:143610400-143611600	Enhancers	Fetal Stomach	stomach
3	chr3:143611000-143611600	Enhancers	Fetal Muscle Leg	muscle
4	chr3:143611000-143612000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:143611000-143612400	Enhancers	Fetal Thymus	thymus
6	chr3:143611200-143611800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:143611200-143612000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:143611200-143616400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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