Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1504603	1.00[GIH][hapmap]
rs1504604	1.00[GIH][hapmap]
rs1504605	1.00[GIH][hapmap]
rs16834862	1.00[GIH][hapmap]
rs16854543	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16854623	1.00[ASN][1000 genomes]
rs1995529	1.00[GIH][hapmap]
rs1995530	1.00[GIH][hapmap]
rs4494926	1.00[ASN][1000 genomes]
rs57604330	1.00[ASN][1000 genomes]
rs60095849	1.00[ASN][1000 genomes]
rs60153350	1.00[ASN][1000 genomes]
rs6763899	1.00[ASN][1000 genomes]
rs6780027	1.00[GIH][hapmap]
rs7434217	1.00[GIH][hapmap]
rs7617512	1.00[ASN][1000 genomes]
rs7617571	1.00[ASN][1000 genomes]
rs7624170	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs7653164	1.00[GIH][hapmap]
rs9289669	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs9847107	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16854580	GAS2	trans	lymphoblastoid	seeQTL
rs16854580	CHST2	cis	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143585600-143587200	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:143585600-143587400	Enhancers	Primary B cells from cord blood	blood

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