Variant report

Variant	rs9289669
Chromosome Location	chr3:143575195-143575196
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr3:143575114-143575472	K562	blood:	n/a	chr3:143575288-143575306
2	MAFK	chr3:143575107-143575479	HepG2	liver:	n/a	chr3:143575294-143575305 chr3:143575293-143575304 chr3:143575289-143575305 chr3:143575289-143575304 chr3:143575294-143575305
3	MAFF	chr3:143575096-143575473	HepG2	liver:	n/a	chr3:143575288-143575306
4	MAFK	chr3:143575163-143575471	Hela-S3	cervix:	n/a	chr3:143575294-143575305 chr3:143575293-143575304 chr3:143575289-143575305 chr3:143575289-143575304 chr3:143575294-143575305
5	MAFK	chr3:143575132-143575421	H1-hESC	embryonic stem cell:	n/a	chr3:143575294-143575305 chr3:143575293-143575304 chr3:143575289-143575305 chr3:143575289-143575304 chr3:143575294-143575305
6	MAFK	chr3:143575115-143575475	IMR90	lung:	n/a	chr3:143575294-143575305 chr3:143575293-143575304 chr3:143575289-143575305 chr3:143575289-143575304 chr3:143575294-143575305
7	MAFK	chr3:143575116-143575467	HepG2	liver:	n/a	chr3:143575294-143575305 chr3:143575293-143575304 chr3:143575289-143575305 chr3:143575289-143575304 chr3:143575294-143575305
8	MAFK	chr3:143575120-143575469	K562	blood:	n/a	chr3:143575294-143575305 chr3:143575293-143575304 chr3:143575289-143575305 chr3:143575289-143575304 chr3:143575294-143575305

Variant related genes	Relation type
ENSG00000235110	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10433436	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11714060	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1319100	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1319101	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1394398	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1394402	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1504603	1.00[GIH][hapmap]
rs1504604	1.00[GIH][hapmap]
rs1504605	1.00[GIH][hapmap]
rs16834862	1.00[GIH][hapmap];0.86[YRI][hapmap]
rs16854543	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16854580	1.00[ASN][1000 genomes]
rs16854623	1.00[ASN][1000 genomes]
rs1979911	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1995529	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1995530	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2011290	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2361202	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2361203	0.94[EUR][1000 genomes]
rs2361205	0.94[EUR][1000 genomes]
rs2361206	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2361207	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2361208	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2361209	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2885193	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2885194	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2885195	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4286430	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs4494926	1.00[ASN][1000 genomes]
rs4499594	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4839612	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4839671	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs4839672	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4839673	1.00[EUR][1000 genomes]
rs4839674	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs57604330	1.00[ASN][1000 genomes]
rs60095849	1.00[ASN][1000 genomes]
rs60153350	1.00[ASN][1000 genomes]
rs6440195	1.00[CEU][hapmap]
rs6440196	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6763899	1.00[ASN][1000 genomes]
rs6768702	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780027	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6782974	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7434217	1.00[GIH][hapmap]
rs7617512	1.00[ASN][1000 genomes]
rs7617571	1.00[ASN][1000 genomes]
rs7623477	1.00[EUR][1000 genomes]
rs7624170	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs7627020	1.00[EUR][1000 genomes]
rs7629598	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7645681	1.00[EUR][1000 genomes]
rs7653164	1.00[GIH][hapmap]
rs9824974	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9836851	1.00[EUR][1000 genomes]
rs9847107	1.00[GIH][hapmap]
rs9870661	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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