Variant report

Variant	rs2361203
Chromosome Location	chr3:143552501-143552502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10433436	0.94[EUR][1000 genomes]
rs11714060	0.94[EUR][1000 genomes]
rs1319100	0.94[EUR][1000 genomes]
rs1319101	0.94[EUR][1000 genomes]
rs1394398	0.94[EUR][1000 genomes]
rs1394402	0.94[EUR][1000 genomes]
rs1979911	0.94[EUR][1000 genomes]
rs1995529	0.94[EUR][1000 genomes]
rs1995530	0.94[EUR][1000 genomes]
rs2011290	0.94[EUR][1000 genomes]
rs2361202	0.94[EUR][1000 genomes]
rs2361205	1.00[EUR][1000 genomes]
rs2361206	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2361207	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2361208	0.94[EUR][1000 genomes]
rs2361209	0.94[EUR][1000 genomes]
rs2885193	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2885194	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2885195	0.83[EUR][1000 genomes]
rs4286430	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4499594	0.94[EUR][1000 genomes]
rs4839612	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4839671	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4839672	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4839673	0.94[EUR][1000 genomes]
rs6440195	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs6440196	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6768702	0.94[EUR][1000 genomes]
rs6780027	0.94[EUR][1000 genomes]
rs7623477	0.94[EUR][1000 genomes]
rs7627020	0.94[EUR][1000 genomes]
rs7629598	0.94[EUR][1000 genomes]
rs7645681	0.94[EUR][1000 genomes]
rs9289669	0.94[EUR][1000 genomes]
rs9824974	0.94[EUR][1000 genomes]
rs9836851	0.94[EUR][1000 genomes]
rs9870661	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143539800-143558200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:143541000-143554200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:143541400-143565200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:143542000-143553600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:143542200-143553600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:143544200-143552800	Weak transcription	Fetal Lung	lung
7	chr3:143545400-143558800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:143545600-143565400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:143546000-143559000	Weak transcription	Primary B cells from cord blood	blood
10	chr3:143547000-143558200	Weak transcription	Esophagus	oesophagus
11	chr3:143549000-143552800	Enhancers	Colon Smooth Muscle	Colon
12	chr3:143549200-143565200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:143549400-143565000	Weak transcription	Primary T cells from cord blood	blood
14	chr3:143550000-143558200	Weak transcription	Right Atrium	heart
15	chr3:143550000-143565200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:143550200-143558800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:143550600-143553400	Weak transcription	Brain Anterior Caudate	brain
18	chr3:143550600-143555000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:143550600-143555000	Weak transcription	HSMMtube	muscle
20	chr3:143550600-143558000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:143550800-143554000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:143551200-143558000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:143551400-143555000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:143551400-143561600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:143551400-143563000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:143551400-143565800	Weak transcription	Adipose Nuclei	Adipose
27	chr3:143551600-143558000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:143551600-143559800	Weak transcription	Stomach Mucosa	stomach
29	chr3:143551800-143552600	Enhancers	GM12878-XiMat	blood
30	chr3:143551800-143553600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:143551800-143558000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr3:143551800-143563600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:143552000-143554600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:143552000-143558800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:143552200-143557400	Enhancers	Brain Substantia Nigra	brain
36	chr3:143552400-143552600	ZNF genes & repeats	Aorta	Aorta
37	chr3:143552400-143552600	Enhancers	Ovary	ovary
38	chr3:143552400-143554600	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr3:143552400-143555600	Enhancers	Brain Angular Gyrus	brain

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