Variant report

Variant	rs6768702
Chromosome Location	chr3:143574439-143574440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10433436	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10513218	1.00[CHB][hapmap]
rs11714060	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1319100	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1319101	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1394398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1394402	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1504603	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1504604	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1504605	1.00[GIH][hapmap]
rs16834862	1.00[GIH][hapmap]
rs16854543	1.00[GIH][hapmap]
rs1979911	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1995529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1995530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2011290	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2011297	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2011303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2361202	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2361203	0.94[EUR][1000 genomes]
rs2361205	0.94[EUR][1000 genomes]
rs2361206	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2361207	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2361208	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2361209	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2885193	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2885194	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2885195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4286430	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs4499594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4839612	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4839670	0.83[GIH][hapmap]
rs4839671	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs4839672	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4839673	1.00[EUR][1000 genomes]
rs4839674	1.00[CEU][hapmap]
rs56220620	0.93[ASN][1000 genomes]
rs56407400	0.93[ASN][1000 genomes]
rs57718888	0.93[ASN][1000 genomes]
rs58887384	0.93[ASN][1000 genomes]
rs58921154	0.93[ASN][1000 genomes]
rs59306133	0.93[ASN][1000 genomes]
rs60523819	0.93[ASN][1000 genomes]
rs6440195	1.00[CEU][hapmap]
rs6440196	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6768399	1.00[CHB][hapmap]
rs6780027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782974	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6794907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs73869042	0.93[ASN][1000 genomes]
rs73869048	0.93[ASN][1000 genomes]
rs73869049	0.93[ASN][1000 genomes]
rs73869050	0.93[ASN][1000 genomes]
rs73871822	0.93[ASN][1000 genomes]
rs73871823	0.93[ASN][1000 genomes]
rs73871826	0.93[ASN][1000 genomes]
rs73871827	0.93[ASN][1000 genomes]
rs7434217	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7613146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7621206	0.83[GIH][hapmap]
rs7623477	1.00[EUR][1000 genomes]
rs7624170	1.00[GIH][hapmap]
rs7627020	1.00[EUR][1000 genomes]
rs7629598	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7637640	1.00[JPT][hapmap]
rs7645681	1.00[EUR][1000 genomes]
rs7653164	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap]
rs9289669	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9824974	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9827103	0.83[GIH][hapmap]
rs9836851	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9847107	1.00[GIH][hapmap]
rs9870661	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143572400-143574600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:143572600-143574600	Enhancers	Primary T cells from cord blood	blood
3	chr3:143572800-143574600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr3:143572800-143574800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:143573000-143574600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:143573000-143574600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:143573200-143574600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:143573200-143574600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:143573800-143574600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:143573800-143574600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:143574000-143574600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr3:143574000-143574600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr3:143574000-143574800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links