Variant report

Variant	rs58921154
Chromosome Location	chr3:143573525-143573526
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:29692522..29694043-chr3:143572695..143574216,2	MCF-7	breast:
2	chr3:143572714..143574427-chr3:143574833..143577632,2	K562	blood:

Variant related genes	Relation type
ENSG00000235110	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1394398	1.00[ASN][1000 genomes]
rs1504603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1504604	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1995529	1.00[ASN][1000 genomes]
rs1995530	1.00[ASN][1000 genomes]
rs2011297	0.93[ASN][1000 genomes]
rs2011303	1.00[ASN][1000 genomes]
rs2361205	0.85[ASN][1000 genomes]
rs2885195	1.00[ASN][1000 genomes]
rs4499594	1.00[ASN][1000 genomes]
rs56220620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56407400	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57718888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58887384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59306133	1.00[ASN][1000 genomes]
rs60249173	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60523819	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60550983	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6768702	0.93[ASN][1000 genomes]
rs6780027	0.93[ASN][1000 genomes]
rs6794907	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73869037	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73869039	0.85[ASN][1000 genomes]
rs73869041	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73869042	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73869048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73869049	1.00[ASN][1000 genomes]
rs73869050	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73871822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73871823	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73871826	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73871827	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73871828	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7434217	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7613146	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7637640	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9824974	1.00[ASN][1000 genomes]
rs9836851	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143569200-143573800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:143569600-143574000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:143569600-143574000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:143569600-143574000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:143571000-143574000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:143572400-143574600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:143572600-143574600	Enhancers	Primary T cells from cord blood	blood
8	chr3:143572800-143574600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:143572800-143574800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:143573000-143574600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:143573000-143574600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:143573200-143574600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:143573200-143574600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:143573400-143574400	Enhancers	Fetal Thymus	thymus

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