Variant report

Variant	rs73871828
Chromosome Location	chr3:143573749-143573750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1504603	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1504604	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56220620	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56407400	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57718888	1.00[AMR][1000 genomes]
rs58887384	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58921154	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60249173	1.00[AMR][1000 genomes]
rs60523819	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60550983	1.00[AMR][1000 genomes]
rs6794907	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869037	1.00[AMR][1000 genomes]
rs73869041	1.00[AMR][1000 genomes]
rs73869042	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869048	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869050	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871822	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871823	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871826	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871827	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7434217	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7613146	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7637640	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143569200-143573800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:143569600-143574000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:143569600-143574000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:143569600-143574000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:143571000-143574000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:143572400-143574600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:143572600-143574600	Enhancers	Primary T cells from cord blood	blood
8	chr3:143572800-143574600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:143572800-143574800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:143573000-143574600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:143573000-143574600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:143573200-143574600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:143573200-143574600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:143573400-143574400	Enhancers	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links