Variant report
| Variant | rs16854543 |
|---|---|
| Chromosome Location | chr3:143575594-143575595 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr3:143575495-143575784 | HUVEC | blood vessel: | n/a | chr3:143575607-143575618 chr3:143575612-143575619 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235110 | TF binding region |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1504603 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs1504604 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs1504605 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs16834862 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs16854545 | 1.00[YRI][hapmap] |
| rs16854580 | 1.00[ASN][1000 genomes] |
| rs16854623 | 1.00[ASN][1000 genomes] |
| rs1995529 | 1.00[GIH][hapmap] |
| rs1995530 | 1.00[GIH][hapmap] |
| rs4494926 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57604330 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59306133 | 1.00[AMR][1000 genomes] |
| rs60095849 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60153350 | 1.00[ASN][1000 genomes] |
| rs6763899 | 1.00[ASN][1000 genomes] |
| rs6780027 | 1.00[GIH][hapmap] |
| rs6787778 | 1.00[AMR][1000 genomes] |
| rs73869039 | 1.00[AMR][1000 genomes] |
| rs73869049 | 1.00[AMR][1000 genomes] |
| rs7434217 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs7617512 | 1.00[ASN][1000 genomes] |
| rs7617571 | 1.00[ASN][1000 genomes] |
| rs7624170 | 1.00[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs7653164 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs9289669 | 1.00[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs9847107 | 1.00[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949288 | chr3:142793323-143585882 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009935 | chr3:143497700-143610852 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
