Variant report
| Variant | rs16854545 |
|---|---|
| Chromosome Location | chr3:143575843-143575844 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs16854543 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16854580 | 1.00[ASN][1000 genomes] |
| rs16854623 | 1.00[ASN][1000 genomes] |
| rs4494926 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57604330 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59306133 | 1.00[AMR][1000 genomes] |
| rs60095849 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60153350 | 1.00[ASN][1000 genomes] |
| rs6763899 | 1.00[ASN][1000 genomes] |
| rs6787778 | 1.00[AMR][1000 genomes] |
| rs73869039 | 1.00[AMR][1000 genomes] |
| rs73869049 | 1.00[AMR][1000 genomes] |
| rs7617512 | 1.00[ASN][1000 genomes] |
| rs7617571 | 1.00[ASN][1000 genomes] |
| rs7624170 | 1.00[ASN][1000 genomes] |
| rs9289669 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949288 | chr3:142793323-143585882 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009935 | chr3:143497700-143610852 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
