Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1504603	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1504604	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1504605	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs16834862	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs16854543	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16854580	1.00[ASN][1000 genomes]
rs16854623	1.00[ASN][1000 genomes]
rs1995529	1.00[GIH][hapmap]
rs1995530	1.00[GIH][hapmap]
rs57604330	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59306133	1.00[AMR][1000 genomes]
rs60095849	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60153350	1.00[ASN][1000 genomes]
rs6763899	1.00[ASN][1000 genomes]
rs6780027	1.00[GIH][hapmap]
rs6787778	1.00[AMR][1000 genomes]
rs73869039	1.00[AMR][1000 genomes]
rs73869049	1.00[AMR][1000 genomes]
rs7434217	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7617512	1.00[ASN][1000 genomes]
rs7617571	1.00[ASN][1000 genomes]
rs7624170	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs7653164	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9289669	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs9847107	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143589400-143594600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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