Variant report

Variant	rs57604330
Chromosome Location	chr3:143586437-143586438
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16854543	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16854580	1.00[ASN][1000 genomes]
rs16854623	1.00[ASN][1000 genomes]
rs4494926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59306133	1.00[AMR][1000 genomes]
rs60095849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60153350	1.00[ASN][1000 genomes]
rs6763899	1.00[ASN][1000 genomes]
rs6787778	1.00[AMR][1000 genomes]
rs73869039	1.00[AMR][1000 genomes]
rs73869049	1.00[AMR][1000 genomes]
rs7617512	1.00[ASN][1000 genomes]
rs7617571	1.00[ASN][1000 genomes]
rs7624170	1.00[ASN][1000 genomes]
rs9289669	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143585600-143587200	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:143585600-143587400	Enhancers	Primary B cells from cord blood	blood
3	chr3:143586400-143586800	Enhancers	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links