Variant report

Variant	rs4839674
Chromosome Location	chr3:143577515-143577516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10433436	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11714060	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1319100	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1319101	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1394398	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1394402	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16834862	0.91[YRI][hapmap]
rs16854543	1.00[ASN][1000 genomes]
rs16854580	1.00[ASN][1000 genomes]
rs16854623	1.00[ASN][1000 genomes]
rs1979911	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1995529	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1995530	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2011290	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2361202	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2361203	0.94[EUR][1000 genomes]
rs2361205	0.94[EUR][1000 genomes]
rs2361206	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2361207	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2361208	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2361209	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2885193	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2885194	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2885195	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4286430	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4494926	1.00[ASN][1000 genomes]
rs4499594	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4839612	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4839671	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4839672	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4839673	1.00[EUR][1000 genomes]
rs57604330	1.00[ASN][1000 genomes]
rs60095849	1.00[ASN][1000 genomes]
rs60153350	1.00[ASN][1000 genomes]
rs6440195	1.00[CEU][hapmap]
rs6440196	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6763899	1.00[ASN][1000 genomes]
rs6768702	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780027	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6782974	1.00[CEU][hapmap]
rs7617512	1.00[ASN][1000 genomes]
rs7617571	1.00[ASN][1000 genomes]
rs7623477	1.00[EUR][1000 genomes]
rs7624170	1.00[ASN][1000 genomes]
rs7627020	1.00[EUR][1000 genomes]
rs7629598	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7645681	1.00[EUR][1000 genomes]
rs9289669	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824974	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9836851	1.00[EUR][1000 genomes]
rs9870661	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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