Variant report

Variant	rs7628788
Chromosome Location	chr3:143621935-143621936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2361210	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2885196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59629277	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60705908	0.81[ASN][1000 genomes]
rs61201104	1.00[ASN][1000 genomes]
rs61646440	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803662	1.00[ASN][1000 genomes]
rs73010596	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73010600	1.00[ASN][1000 genomes]
rs7617190	0.81[ASN][1000 genomes]
rs7628380	1.00[ASN][1000 genomes]
rs7650329	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2646891	chr3:143620488-143621943	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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