Variant report

Variant	rs10514558
Chromosome Location	chr16:82783100-82783101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1000076	0.96[ASN][1000 genomes]
rs1000078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10438634	0.84[ASN][1000 genomes]
rs10514557	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10514559	0.94[CHB][hapmap]
rs1157118	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs11646288	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11646321	0.94[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs11647530	0.92[ASN][1000 genomes]
rs11647888	0.83[AMR][1000 genomes]
rs11648238	0.82[AMR][1000 genomes]
rs12103370	0.85[JPT][hapmap]
rs12448904	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1350888	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1350889	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1462035	0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs1462037	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1462043	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17183029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17183071	0.94[ASN][1000 genomes]
rs17183279	0.96[ASN][1000 genomes]
rs17183490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17273696	0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs17274555	0.96[ASN][1000 genomes]
rs17274597	0.89[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs17274793	0.97[ASN][1000 genomes]
rs17274905	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2126369	0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs2318186	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2318187	0.96[ASN][1000 genomes]
rs2318190	0.86[JPT][hapmap]
rs28374534	0.80[ASN][1000 genomes]
rs4238723	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4293370	0.94[ASN][1000 genomes]
rs4620944	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4783262	0.81[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs4783263	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4783266	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55713633	0.93[ASN][1000 genomes]
rs58786779	0.95[ASN][1000 genomes]
rs62034474	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62034479	0.91[ASN][1000 genomes]
rs62034480	0.92[ASN][1000 genomes]
rs62034481	0.92[ASN][1000 genomes]
rs62034482	0.92[ASN][1000 genomes]
rs62034484	0.93[ASN][1000 genomes]
rs7185447	0.96[ASN][1000 genomes]
rs7197336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7197344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7197523	0.96[ASN][1000 genomes]
rs7201087	0.96[ASN][1000 genomes]
rs7201338	0.85[ASN][1000 genomes]
rs8044955	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8046067	0.93[ASN][1000 genomes]
rs8046098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8060282	0.89[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1059718	chr16:82564054-82810003	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv573379	chr16:82713551-82887631	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	esv2751616	chr16:82714696-82852296	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1067216	chr16:82719694-82821762	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv543000	chr16:82719694-82821762	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1064438	chr16:82762729-82788901	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv907026	chr16:82765607-82812853	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1066132	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv543001	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82766800-82788600	Weak transcription	HMEC	breast
2	chr16:82768600-82784800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr16:82769200-82785200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:82774400-82792200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:82774600-82787400	Weak transcription	NHEK	skin
6	chr16:82781600-82789000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr16:82781800-82783400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr16:82781800-82785400	Enhancers	HUVEC	blood vessel
9	chr16:82781800-82788400	Weak transcription	Fetal Heart	heart
10	chr16:82781800-82788600	Weak transcription	Right Atrium	heart
11	chr16:82781800-82788800	Weak transcription	Aorta	Aorta
12	chr16:82782000-82787200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr16:82782000-82790000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr16:82782200-82786200	Weak transcription	NH-A	brain
15	chr16:82782200-82787200	Weak transcription	NHDF-Ad	bronchial
16	chr16:82782200-82787200	Weak transcription	Osteobl	bone
17	chr16:82782200-82787600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr16:82782200-82788400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr16:82782200-82790000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr16:82782400-82787000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr16:82782400-82789200	Weak transcription	HSMMtube	muscle
22	chr16:82782600-82790200	Weak transcription	Adipose Nuclei	Adipose
23	chr16:82782800-82783600	Strong transcription	HSMM	muscle
24	chr16:82782800-82784400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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