Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11253	0.93[CEU][hapmap]
rs12186563	0.87[ASN][1000 genomes]
rs12187616	0.87[ASN][1000 genomes]
rs12188414	0.92[CEU][hapmap]
rs12189428	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs12513976	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519254	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs12519388	0.93[CEU][hapmap]
rs12520230	1.00[ASW][hapmap];1.00[CHD][hapmap];0.90[MEX][hapmap];0.95[MKK][hapmap];0.82[ASN][1000 genomes]
rs12522548	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs12522552	0.93[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs17160630	0.83[EUR][1000 genomes]
rs17160706	0.85[GIH][hapmap];0.90[MEX][hapmap]
rs17369104	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17435188	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3842914	0.82[ASN][1000 genomes]
rs3842915	0.82[ASN][1000 genomes]
rs3843491	0.82[ASN][1000 genomes]
rs3843492	0.82[ASN][1000 genomes]
rs62355954	1.00[ASN][1000 genomes]
rs62355956	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6864994	0.82[ASN][1000 genomes]
rs7736608	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10515380	SLC25A46	cis	cerebellum	SCAN
rs10515380	FBXL17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107144400-107167600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:107153600-107162000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:107156200-107161800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:107156800-107159600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:107157200-107166600	Weak transcription	NHDF-Ad	bronchial
6	chr5:107158400-107161200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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