Variant report

Variant	rs10516296
Chromosome Location	chr4:16182770-16182771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:16181639..16184226-chr4:16188641..16191282,2	K562	blood:
2	chr4:16182193..16183806-chr4:16249768..16252550,2	K562	blood:
3	chr4:16176527..16179395-chr4:16180746..16183280,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169762	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10007592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946259	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1373109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16893153	0.98[AFR][1000 genomes]
rs16893164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2011754	0.95[ASN][1000 genomes]
rs28403341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28481627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496446	0.95[ASN][1000 genomes]
rs28517428	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537328	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28726676	0.95[ASN][1000 genomes]
rs28757814	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4510462	0.80[ASN][1000 genomes]
rs57110573	1.00[ASN][1000 genomes]
rs58468710	1.00[ASN][1000 genomes]
rs6823623	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7359	1.00[JPT][hapmap]
rs73798865	1.00[ASN][1000 genomes]
rs73798866	1.00[ASN][1000 genomes]
rs73798869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73798871	0.91[ASN][1000 genomes]
rs73798874	0.95[ASN][1000 genomes]
rs73798875	0.95[ASN][1000 genomes]
rs73798883	0.95[ASN][1000 genomes]
rs73802012	0.85[ASN][1000 genomes]
rs7664407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668729	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7690701	0.86[ASN][1000 genomes]
rs9946	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16161600-16182800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:16161600-16186000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:16161800-16193200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr4:16162200-16182800	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr4:16162600-16183200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr4:16163000-16182800	Strong transcription	Liver	Liver
7	chr4:16163000-16183200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:16163000-16183200	Strong transcription	Placenta	Placenta
9	chr4:16163200-16183400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:16163200-16183400	Weak transcription	Hela-S3	cervix
11	chr4:16163200-16195800	Weak transcription	HMEC	breast
12	chr4:16164200-16183000	Strong transcription	Primary hematopoietic stem cells	blood
13	chr4:16164400-16195000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:16164800-16183000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:16165000-16190800	Weak transcription	HUVEC	blood vessel
16	chr4:16168000-16208000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:16168000-16213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:16168200-16187400	Weak transcription	Osteobl	bone
19	chr4:16168200-16198000	Weak transcription	A549	lung
20	chr4:16168400-16194600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:16168400-16197800	Weak transcription	NHLF	lung
22	chr4:16168400-16198000	Weak transcription	NH-A	brain
23	chr4:16168600-16191000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:16168600-16198000	Weak transcription	NHEK	skin
25	chr4:16170400-16191400	Weak transcription	Colonic Mucosa	Colon
26	chr4:16170600-16191000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:16170800-16208000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:16171400-16207200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr4:16171600-16191000	Weak transcription	Esophagus	oesophagus
30	chr4:16171600-16191600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:16171600-16194400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:16171600-16198000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:16172000-16187200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr4:16172000-16191000	Weak transcription	Pancreas	Pancrea
35	chr4:16172000-16191000	Weak transcription	Small Intestine	intestine
36	chr4:16172000-16191000	Weak transcription	Spleen	Spleen
37	chr4:16172000-16198000	Weak transcription	HSMMtube	muscle
38	chr4:16172200-16190800	Weak transcription	Right Ventricle	heart
39	chr4:16172400-16187400	Weak transcription	Fetal Kidney	kidney
40	chr4:16172600-16191000	Weak transcription	Fetal Brain Female	brain
41	chr4:16172800-16190800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:16174400-16196800	Weak transcription	Stomach Mucosa	stomach
43	chr4:16175000-16187200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:16175000-16187400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr4:16175400-16182800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:16176000-16191200	Weak transcription	NHDF-Ad	bronchial
47	chr4:16176200-16198000	Weak transcription	HSMM	muscle
48	chr4:16177000-16194000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr4:16177600-16182800	Strong transcription	Primary B cells from cord blood	blood
50	chr4:16177600-16183000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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