The 2.0 version of rSNPBase

Variant report

Variant rs11946259
Chromosome Location chr4:16203935-16203936
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:16168000-16208000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr4:16168000-16213800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr4:16170800-16208000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr4:16171400-16207200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr4:16181200-16223800 Weak transcription Fetal Brain Male brain
6 chr4:16191400-16207000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr4:16192200-16204800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr4:16193000-16205000 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr4:16193000-16207600 Weak transcription Brain Germinal Matrix brain
10 chr4:16193000-16208200 Weak transcription Esophagus oesophagus
11 chr4:16193000-16216000 Weak transcription Spleen Spleen
12 chr4:16193000-16225800 Weak transcription Colonic Mucosa Colon
13 chr4:16193200-16205800 Weak transcription Fetal Intestine Small intestine
14 chr4:16193200-16206800 Weak transcription Primary T killer naive cells fromperipheralblood blood
15 chr4:16193200-16207000 Weak transcription Pancreas Pancrea
16 chr4:16193200-16208000 Weak transcription H9 Cell Line embryonic stem cell
17 chr4:16193200-16208000 Weak transcription Lung lung
18 chr4:16193200-16225800 Weak transcription Fetal Brain Female brain
19 chr4:16193400-16211200 Weak transcription Placenta Placenta
20 chr4:16193600-16208600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr4:16193800-16206400 Weak transcription K562 blood
22 chr4:16195000-16204800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr4:16195400-16207000 Weak transcription Gastric stomach
24 chr4:16196200-16207600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr4:16198600-16207200 Weak transcription ES-WA7 Cell Line embryonic stem cell
26 chr4:16198600-16211200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr4:16198600-16216400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr4:16198600-16221200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr4:16198600-16222400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr4:16198800-16204600 Weak transcription Stomach Smooth Muscle stomach
31 chr4:16198800-16204800 Weak transcription Primary neutrophils fromperipheralblood blood
32 chr4:16198800-16205600 Weak transcription GM12878-XiMat blood
33 chr4:16198800-16206200 Weak transcription Psoas Muscle Psoas
34 chr4:16198800-16211400 Weak transcription Aorta Aorta
35 chr4:16198800-16218800 Weak transcription HSMM muscle
36 chr4:16198800-16225600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr4:16198800-16226000 Weak transcription NHEK skin
38 chr4:16198800-16226400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr4:16199000-16205000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr4:16199000-16205200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr4:16199000-16206200 Weak transcription Right Atrium heart
42 chr4:16199000-16206200 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr4:16199800-16205200 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr4:16199800-16207000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr4:16199800-16207000 Weak transcription Fetal Kidney kidney
46 chr4:16199800-16208000 Weak transcription Small Intestine intestine
47 chr4:16199800-16209800 Weak transcription NHLF lung
48 chr4:16199800-16215800 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr4:16200000-16204600 Weak transcription Brain Cingulate Gyrus brain
50 chr4:16200000-16206200 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015