Variant report
| Variant | rs60616838 |
|---|---|
| Chromosome Location | chr4:16145203-16145204 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:16033674..16036542-chr4:16143122..16145633,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11931779 | 1.00[EUR][1000 genomes] |
| rs11940412 | 1.00[EUR][1000 genomes] |
| rs11946259 | 1.00[EUR][1000 genomes] |
| rs28418449 | 1.00[EUR][1000 genomes] |
| rs55877538 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56091285 | 1.00[EUR][1000 genomes] |
| rs56358846 | 1.00[EUR][1000 genomes] |
| rs56815412 | 1.00[EUR][1000 genomes] |
| rs57110573 | 1.00[EUR][1000 genomes] |
| rs58219808 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58468710 | 1.00[EUR][1000 genomes] |
| rs59786002 | 1.00[EUR][1000 genomes] |
| rs60194927 | 1.00[EUR][1000 genomes] |
| rs6823623 | 1.00[EUR][1000 genomes] |
| rs73798737 | 1.00[EUR][1000 genomes] |
| rs73798844 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73798846 | 1.00[EUR][1000 genomes] |
| rs73798848 | 1.00[EUR][1000 genomes] |
| rs73798849 | 1.00[EUR][1000 genomes] |
| rs73798850 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73798856 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73798858 | 1.00[EUR][1000 genomes] |
| rs73798865 | 1.00[EUR][1000 genomes] |
| rs73798866 | 1.00[EUR][1000 genomes] |
| rs73798867 | 1.00[EUR][1000 genomes] |
| rs73798870 | 0.83[AFR][1000 genomes] |
| rs73798871 | 1.00[EUR][1000 genomes] |
| rs73798872 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73798873 | 1.00[EUR][1000 genomes] |
| rs73798876 | 1.00[EUR][1000 genomes] |
| rs73798882 | 1.00[EUR][1000 genomes] |
| rs73802012 | 1.00[EUR][1000 genomes] |
| rs73802027 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998299 | chr4:16031459-16226466 | Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1004821 | chr4:16055996-16830629 | Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv537046 | chr4:16055996-16830629 | Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:16142800-16145400 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 2 | chr4:16144800-16145800 | Weak transcription | HepG2 | liver |
