Variant report

Variant	rs73798737
Chromosome Location	chr4:16336347-16336348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11931779	1.00[EUR][1000 genomes]
rs11940412	1.00[EUR][1000 genomes]
rs11946259	1.00[EUR][1000 genomes]
rs28418449	1.00[EUR][1000 genomes]
rs55877538	1.00[EUR][1000 genomes]
rs56098580	1.00[AMR][1000 genomes]
rs56358846	1.00[EUR][1000 genomes]
rs56814297	1.00[AMR][1000 genomes]
rs56815412	1.00[EUR][1000 genomes]
rs57110573	1.00[EUR][1000 genomes]
rs57136023	1.00[AMR][1000 genomes]
rs57241173	1.00[AMR][1000 genomes]
rs58219808	1.00[EUR][1000 genomes]
rs58468710	1.00[EUR][1000 genomes]
rs58537556	1.00[EUR][1000 genomes]
rs58951424	1.00[AMR][1000 genomes]
rs59786002	1.00[EUR][1000 genomes]
rs60194927	1.00[EUR][1000 genomes]
rs60616838	1.00[EUR][1000 genomes]
rs61655036	1.00[AMR][1000 genomes]
rs6823623	1.00[EUR][1000 genomes]
rs73115968	1.00[EUR][1000 genomes]
rs73115969	1.00[EUR][1000 genomes]
rs73798741	1.00[AMR][1000 genomes]
rs73798748	1.00[AMR][1000 genomes]
rs73798762	1.00[AMR][1000 genomes]
rs73798767	1.00[AMR][1000 genomes]
rs73798768	1.00[AMR][1000 genomes]
rs73798769	1.00[AMR][1000 genomes]
rs73798770	1.00[AMR][1000 genomes]
rs73798786	1.00[AMR][1000 genomes]
rs73798844	1.00[EUR][1000 genomes]
rs73798846	1.00[EUR][1000 genomes]
rs73798848	1.00[EUR][1000 genomes]
rs73798849	1.00[EUR][1000 genomes]
rs73798850	1.00[EUR][1000 genomes]
rs73798856	1.00[EUR][1000 genomes]
rs73798858	1.00[EUR][1000 genomes]
rs73798865	1.00[EUR][1000 genomes]
rs73798866	1.00[EUR][1000 genomes]
rs73798867	1.00[EUR][1000 genomes]
rs73798871	1.00[EUR][1000 genomes]
rs73798872	1.00[EUR][1000 genomes]
rs73798873	1.00[EUR][1000 genomes]
rs73798876	1.00[EUR][1000 genomes]
rs73798882	1.00[EUR][1000 genomes]
rs73802011	1.00[AMR][1000 genomes]
rs73802012	1.00[EUR][1000 genomes]
rs73802027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7666923	1.00[EUR][1000 genomes]
rs9994688	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1002051	chr4:16335379-16363909	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv999436	chr4:16335379-16375164	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv432582	chr4:16335379-16379580	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv593779	chr4:16336013-16375164	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16335400-16338400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:16336000-16337200	Enhancers	Fetal Kidney	kidney

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