Variant report

Variant	rs57241173
Chromosome Location	chr4:16445019-16445020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56098580	1.00[AMR][1000 genomes]
rs56814297	1.00[AMR][1000 genomes]
rs57136023	1.00[AMR][1000 genomes]
rs58951424	1.00[AMR][1000 genomes]
rs58960230	1.00[AFR][1000 genomes]
rs61655036	1.00[AMR][1000 genomes]
rs73798737	1.00[AMR][1000 genomes]
rs73798741	1.00[AMR][1000 genomes]
rs73798748	1.00[AMR][1000 genomes]
rs73798762	1.00[AMR][1000 genomes]
rs73798767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798769	1.00[AMR][1000 genomes]
rs73798770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73802027	1.00[AMR][1000 genomes]
rs9994688	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3348070	chr4:16443211-16445333	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3323275	chr4:16443309-16445297	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3495170	chr4:16443327-16445273	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3495171	chr4:16443327-16445273	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3375483	chr4:16443330-16445289	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3464824	chr4:16444126-16460945	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv3464823	chr4:16444153-16460887	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv3464825	chr4:16444153-16460887	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv822496	chr4:16444239-16460859	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16443800-16449600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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