Variant report

Variant	rs56098580
Chromosome Location	chr4:16509180-16509181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16893783	1.00[AMR][1000 genomes]
rs56814297	1.00[AMR][1000 genomes]
rs57136023	1.00[AMR][1000 genomes]
rs57241173	1.00[AMR][1000 genomes]
rs58951424	1.00[AMR][1000 genomes]
rs61655036	1.00[AMR][1000 genomes]
rs73798737	1.00[AMR][1000 genomes]
rs73798741	1.00[AMR][1000 genomes]
rs73798748	1.00[AMR][1000 genomes]
rs73798762	1.00[AMR][1000 genomes]
rs73798767	1.00[AMR][1000 genomes]
rs73798768	1.00[AMR][1000 genomes]
rs73798769	1.00[AMR][1000 genomes]
rs73798770	1.00[AMR][1000 genomes]
rs73798786	1.00[AMR][1000 genomes]
rs9994688	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16498400-16513200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:16498400-16518200	Weak transcription	Brain Angular Gyrus	brain
3	chr4:16501200-16509400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:16501400-16510800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:16501400-16511400	Weak transcription	Gastric	stomach
6	chr4:16502200-16510800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:16502200-16512200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:16502400-16510800	Strong transcription	Fetal Muscle Trunk	muscle
9	chr4:16502800-16511400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:16502800-16512200	Weak transcription	Pancreas	Pancrea
11	chr4:16503000-16510600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:16503000-16510800	Weak transcription	Fetal Lung	lung
13	chr4:16503000-16511200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:16503000-16511400	Weak transcription	Right Ventricle	heart
15	chr4:16503000-16513000	Weak transcription	Primary T cells from cord blood	blood
16	chr4:16503200-16509200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:16503200-16509200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:16503200-16510600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:16503200-16510800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:16503200-16518400	Weak transcription	Brain Substantia Nigra	brain
21	chr4:16503400-16510200	Weak transcription	Fetal Kidney	kidney
22	chr4:16504200-16509600	Strong transcription	Fetal Muscle Leg	muscle
23	chr4:16504600-16509600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr4:16504600-16511400	Weak transcription	Esophagus	oesophagus
25	chr4:16504600-16511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:16505400-16509400	Weak transcription	Colon Smooth Muscle	Colon
27	chr4:16505400-16513400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:16505400-16522200	Weak transcription	Lung	lung
29	chr4:16505600-16509200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr4:16505800-16509400	Weak transcription	Fetal Brain Female	brain
31	chr4:16505800-16512000	Weak transcription	Brain Hippocampus Middle	brain
32	chr4:16506400-16514600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:16506600-16510600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:16507400-16509600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:16507400-16511400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:16507800-16509200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:16507800-16509600	Weak transcription	Placenta	Placenta
38	chr4:16508200-16510400	Strong transcription	Adipose Nuclei	Adipose
39	chr4:16508200-16510800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:16508200-16511400	Strong transcription	Ovary	ovary
41	chr4:16508400-16509400	Weak transcription	HUVEC	blood vessel
42	chr4:16508600-16510200	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr4:16508800-16510400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:16508800-16510600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr4:16508800-16510600	Strong transcription	Fetal Stomach	stomach
46	chr4:16508800-16510800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:16509000-16510000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:16509000-16510400	Strong transcription	Liver	Liver
49	chr4:16509000-16510400	Strong transcription	Left Ventricle	heart
50	chr4:16509000-16510400	Strong transcription	Spleen	Spleen

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