Variant report

Variant	rs16893783
Chromosome Location	chr4:16686694-16686695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11945913	1.00[AMR][1000 genomes]
rs56098580	1.00[AMR][1000 genomes]
rs61655036	1.00[AMR][1000 genomes]
rs73798786	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16668000-16707000	Weak transcription	Pancreas	Pancrea
2	chr4:16668600-16694200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:16671000-16699200	Weak transcription	Aorta	Aorta
4	chr4:16674000-16695000	Weak transcription	Psoas Muscle	Psoas
5	chr4:16674400-16693400	Weak transcription	Adipose Nuclei	Adipose
6	chr4:16679200-16687200	Weak transcription	Left Ventricle	heart
7	chr4:16679800-16688000	Weak transcription	Right Atrium	heart
8	chr4:16679800-16690600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:16680200-16689400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:16681600-16695000	Weak transcription	Lung	lung
11	chr4:16682000-16690600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:16682000-16695200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:16682000-16702000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:16682400-16702400	Weak transcription	Fetal Brain Male	brain
15	chr4:16683800-16687000	Enhancers	Fetal Kidney	kidney
16	chr4:16684000-16687000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr4:16684000-16687200	Enhancers	Fetal Lung	lung
18	chr4:16684000-16687200	Enhancers	Fetal Stomach	stomach
19	chr4:16684600-16690000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:16685200-16689000	Enhancers	NHDF-Ad	bronchial
21	chr4:16685200-16689600	Enhancers	NHLF	lung
22	chr4:16685400-16689200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:16685600-16687600	Enhancers	NH-A	brain
24	chr4:16685800-16693200	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:16686000-16686800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:16686200-16686800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:16686200-16686800	Weak transcription	Ovary	ovary
28	chr4:16686200-16687000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:16686200-16687600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:16686200-16690000	Enhancers	Osteobl	bone
31	chr4:16686400-16688400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr4:16686400-16688600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:16686400-16689000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:16686400-16689200	Enhancers	HUVEC	blood vessel
35	chr4:16686600-16688600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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