Variant report
| Variant | rs7666923 |
|---|---|
| Chromosome Location | chr4:16414641-16414642 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:16409590..16411758-chr4:16414173..16416975,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs55877538 | 1.00[EUR][1000 genomes] |
| rs56815412 | 1.00[EUR][1000 genomes] |
| rs57110573 | 1.00[EUR][1000 genomes] |
| rs58219808 | 1.00[EUR][1000 genomes] |
| rs58537556 | 1.00[EUR][1000 genomes] |
| rs59786002 | 1.00[EUR][1000 genomes] |
| rs6823623 | 1.00[EUR][1000 genomes] |
| rs73115968 | 1.00[EUR][1000 genomes] |
| rs73115969 | 1.00[EUR][1000 genomes] |
| rs73798737 | 1.00[EUR][1000 genomes] |
| rs73798882 | 1.00[EUR][1000 genomes] |
| rs73802012 | 1.00[EUR][1000 genomes] |
| rs73802027 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004821 | chr4:16055996-16830629 | Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv537046 | chr4:16055996-16830629 | Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv428755 | chr4:16366311-16528135 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv2763342 | chr4:16413300-16430564 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:16413400-16417200 | Weak transcription | Fetal Kidney | kidney |
