Variant report
Variant | rs10516917 |
---|---|
Chromosome Location | chr4:93788601-93788602 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11724149 | 0.97[EUR][1000 genomes] |
rs11731176 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11735581 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11935384 | 0.87[EUR][1000 genomes] |
rs17019977 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17324164 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17326038 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62308160 | 0.90[EUR][1000 genomes] |
rs62308162 | 0.87[EUR][1000 genomes] |
rs62310193 | 0.80[EUR][1000 genomes] |
rs62310228 | 0.82[EUR][1000 genomes] |
rs62310230 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62310234 | 0.93[EUR][1000 genomes] |
rs62310236 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62310238 | 0.93[EUR][1000 genomes] |
rs62310242 | 0.93[EUR][1000 genomes] |
rs62310246 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62311162 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62311167 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62311168 | 0.97[EUR][1000 genomes] |
rs62311175 | 0.97[EUR][1000 genomes] |
rs6818830 | 0.93[EUR][1000 genomes] |
rs6852841 | 0.93[EUR][1000 genomes] |
rs6854199 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1003350 | chr4:93566813-93821353 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv1011652 | chr4:93618181-93891388 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv916371 | chr4:93673026-93994807 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv427688 | chr4:93680331-93830824 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv879611 | chr4:93707288-93987251 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | esv2760848 | chr4:93746511-93804020 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv1010290 | chr4:93753135-93830001 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv879612 | chr4:93761619-93969165 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:93758200-93802200 | Weak transcription | H1 Cell Line | embryonic stem cell |
2 | chr4:93786000-93800600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
3 | chr4:93788600-93788800 | Enhancers | Cortex derived primary cultured neurospheres | brain |