Variant report

Variant	rs62311162
Chromosome Location	chr4:93770814-93770815
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724149	0.97[EUR][1000 genomes]
rs11731176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735581	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935384	0.87[EUR][1000 genomes]
rs17019977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17324164	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17326038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308160	0.90[EUR][1000 genomes]
rs62308162	0.87[EUR][1000 genomes]
rs62310193	0.80[EUR][1000 genomes]
rs62310228	0.82[EUR][1000 genomes]
rs62310230	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62310234	0.93[EUR][1000 genomes]
rs62310236	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62310238	0.93[EUR][1000 genomes]
rs62310242	0.93[EUR][1000 genomes]
rs62310246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62311167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62311168	0.97[EUR][1000 genomes]
rs62311175	0.97[EUR][1000 genomes]
rs6818830	0.93[EUR][1000 genomes]
rs6852841	0.93[EUR][1000 genomes]
rs6854199	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003350	chr4:93566813-93821353	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1011652	chr4:93618181-93891388	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916948	chr4:93657711-93786768	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv427688	chr4:93680331-93830824	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv879611	chr4:93707288-93987251	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2760848	chr4:93746511-93804020	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1010290	chr4:93753135-93830001	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv879612	chr4:93761619-93969165	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93758200-93802200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:93768400-93773400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:93768600-93773000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:93768600-93773400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:93769400-93785000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:93770000-93772800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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