Variant report

Variant	rs10518563
Chromosome Location	chr4:131046911-131046912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13116547	0.88[AMR][1000 genomes]
rs13116660	0.88[AMR][1000 genomes]
rs13124885	0.84[EUR][1000 genomes]
rs1472192	0.88[AMR][1000 genomes]
rs17406531	0.86[EUR][1000 genomes]
rs2391598	0.88[AMR][1000 genomes]
rs4864337	0.88[AMR][1000 genomes]
rs4864338	0.88[AMR][1000 genomes]
rs55986606	0.96[EUR][1000 genomes]
rs56336463	0.88[AMR][1000 genomes]
rs6817012	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6827267	0.88[AMR][1000 genomes]
rs6844643	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs724262	0.85[EUR][1000 genomes]
rs7660889	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025539	chr4:131033276-131728033	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv537253	chr4:131033276-131728033	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:131032800-131052200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:131044800-131047000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:131044800-131047200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:131045000-131056600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:131046600-131047200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:131046800-131047000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:131046800-131047000	Enhancers	Colon Smooth Muscle	Colon
8	chr4:131046800-131047000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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