Variant report
| Variant | rs13116660 |
|---|---|
| Chromosome Location | chr4:131012214-131012215 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10000116 | 0.96[ASN][1000 genomes] |
| rs10030169 | 0.95[ASN][1000 genomes] |
| rs10518563 | 0.88[AMR][1000 genomes] |
| rs11099035 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13115484 | 0.95[ASN][1000 genomes] |
| rs13116547 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13134698 | 0.95[ASN][1000 genomes] |
| rs13147905 | 0.96[ASN][1000 genomes] |
| rs1472192 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1472193 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1532248 | 0.95[ASN][1000 genomes] |
| rs1532249 | 0.95[ASN][1000 genomes] |
| rs1588147 | 0.95[ASN][1000 genomes] |
| rs2221618 | 0.93[ASN][1000 genomes] |
| rs2391598 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4864337 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4864338 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55822013 | 0.81[EUR][1000 genomes] |
| rs56336463 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6534767 | 0.81[EUR][1000 genomes] |
| rs6827267 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019114 | chr4:130962945-131013140 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv595414 | chr4:130983055-131024471 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv595415 | chr4:130983605-131046911 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv595416 | chr4:130998472-131834405 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | esv2762461 | chr4:131004382-131391658 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:131008200-131013400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr4:131012200-131012600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
