Variant report

Variant	rs10518827
Chromosome Location	chr15:56197002-56197003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10438326	0.90[ASN][1000 genomes]
rs10518825	1.00[CHB][hapmap];0.89[MEX][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11071232	1.00[ASN][1000 genomes]
rs12900655	0.90[ASN][1000 genomes]
rs1912401	0.90[ASN][1000 genomes]
rs1912408	0.90[ASN][1000 genomes]
rs2288346	0.90[ASN][1000 genomes]
rs2414451	0.87[ASN][1000 genomes]
rs4774836	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62045215	0.81[ASN][1000 genomes]
rs62045217	0.81[ASN][1000 genomes]
rs62045218	0.81[ASN][1000 genomes]
rs7167999	0.90[ASN][1000 genomes]
rs8027762	0.90[ASN][1000 genomes]
rs8043467	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:56188400-56207800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:56188600-56218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:56190000-56220000	Weak transcription	Pancreas	Pancrea
5	chr15:56190200-56199400	Weak transcription	HSMMtube	muscle
6	chr15:56190200-56201800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:56190200-56221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:56190400-56199200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:56190400-56199200	Weak transcription	NHDF-Ad	bronchial
10	chr15:56190400-56199600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:56190400-56219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:56190800-56199400	Weak transcription	Hela-S3	cervix
13	chr15:56192400-56207800	Weak transcription	Liver	Liver
14	chr15:56192600-56199800	Weak transcription	Psoas Muscle	Psoas
15	chr15:56192600-56200800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:56192600-56209000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:56195600-56199000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:56195800-56199200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:56195800-56199200	Weak transcription	NH-A	brain
20	chr15:56195800-56199400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:56195800-56199400	Weak transcription	NHLF	lung
22	chr15:56196600-56197400	Strong transcription	Osteobl	bone
23	chr15:56196600-56197600	Strong transcription	HSMM	muscle
24	chr15:56196600-56197600	Enhancers	NHEK	skin
25	chr15:56196800-56197800	Genic enhancers	A549	lung
26	chr15:56197000-56197200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:56197000-56199400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:56197000-56199400	Weak transcription	HMEC	breast
29	chr15:56197000-56200600	Weak transcription	Placenta Amnion	Placenta Amnion

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