Variant report

Variant	rs10518910
Chromosome Location	chr15:57605274-57605275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57604185..57606036-chr15:57609151..57611286,2	K562	blood:
2	chr15:57602461..57607778-chr15:57612282..57619576,11	K562	blood:
3	chr15:57597621..57600563-chr15:57604167..57606534,3	K562	blood:
4	chr15:57600919..57606103-chr15:57620754..57624822,5	K562	blood:
5	chr15:57598904..57601336-chr15:57602570..57606633,5	K562	blood:
6	chr15:57564291..57566333-chr15:57603914..57606752,2	K562	blood:

Variant related genes	Relation type
ENSG00000260870	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1122890	1.00[CEU][hapmap]
rs12438324	1.00[CEU][hapmap]
rs12438428	1.00[CEU][hapmap]
rs12438782	1.00[CEU][hapmap]
rs12439374	1.00[CEU][hapmap]
rs12440699	1.00[CEU][hapmap]
rs12440878	1.00[CEU][hapmap]
rs12442879	1.00[CEU][hapmap]
rs12443006	0.82[EUR][1000 genomes]
rs12443076	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12443097	0.82[EUR][1000 genomes]
rs1462157	1.00[CEU][hapmap]
rs17239522	1.00[CEU][hapmap]
rs17819994	1.00[CEU][hapmap]
rs17820119	1.00[CEU][hapmap]
rs2126398	1.00[CEU][hapmap]
rs2414499	1.00[CEU][hapmap]
rs4514619	1.00[CEU][hapmap]
rs8031866	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57599400-57612800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:57599600-57612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:57599600-57612800	Weak transcription	GM12878-XiMat	blood
4	chr15:57599600-57614200	Weak transcription	Small Intestine	intestine
5	chr15:57599600-57617800	Weak transcription	Spleen	Spleen
6	chr15:57602000-57605600	Enhancers	Fetal Stomach	stomach
7	chr15:57602000-57605800	Enhancers	Fetal Muscle Trunk	muscle
8	chr15:57602000-57606800	Enhancers	Fetal Intestine Large	intestine
9	chr15:57602400-57606800	Enhancers	Fetal Intestine Small	intestine
10	chr15:57602400-57607200	Enhancers	Fetal Muscle Leg	muscle
11	chr15:57602800-57617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:57603000-57605600	Enhancers	Stomach Mucosa	stomach
13	chr15:57603200-57611400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:57603800-57605600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr15:57604200-57605600	Enhancers	Fetal Lung	lung
16	chr15:57604200-57612800	Weak transcription	Primary B cells from cord blood	blood
17	chr15:57604400-57605400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:57604400-57605600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:57604400-57605600	Enhancers	Fetal Heart	heart
20	chr15:57604400-57605600	Flanking Active TSS	HepG2	liver
21	chr15:57604400-57605600	Flanking Active TSS	K562	blood
22	chr15:57604600-57605600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr15:57604600-57605600	Enhancers	Duodenum Mucosa	Duodenum
24	chr15:57604600-57605600	Enhancers	Placenta	Placenta
25	chr15:57604600-57605600	Enhancers	Fetal Thymus	thymus
26	chr15:57604600-57605600	Enhancers	Left Ventricle	heart
27	chr15:57604600-57605600	Enhancers	Psoas Muscle	Psoas
28	chr15:57604600-57605600	Enhancers	Right Atrium	heart
29	chr15:57604600-57605600	Enhancers	Right Ventricle	heart
30	chr15:57604600-57605600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr15:57604800-57605400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:57604800-57605400	Enhancers	Stomach Smooth Muscle	stomach
33	chr15:57604800-57605600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:57604800-57605600	Enhancers	Fetal Brain Male	brain
35	chr15:57605000-57605400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr15:57605000-57605600	Enhancers	Colonic Mucosa	Colon
37	chr15:57605000-57619400	Weak transcription	Pancreas	Pancrea
38	chr15:57605200-57605600	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr15:57605200-57605600	Enhancers	Sigmoid Colon	Sigmoid Colon

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